And sometimes this can be applied after the fact. Such as in the new season of Dark Matter.

In case someone here is watching this hasn't caught up with all the first couple of episodes just yet . . .

[spoiler space]

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At the close of the latest episode, the crew members [less one casualty but plus a new member] has reassembled on their ship [Raza]. But upon boarding her, Android discovered that what was *partially* done to her computer brain in the prison's tech lab appears to have shorted out her ability to interface directly with the ship. So essentially, Android has now become a human pilot/gunner.